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Proficiency in managing research papers is paramount for the dissemination of knowledge and the advancement of research. However, current journal submission management systems still rely on semi-manual processes for enhancing peer-reviewed papers. This presents significant challenges, including paper retrieval difficulties, a lack of seamless integration, and inefficiencies in the paper review process. These challenges pose critical issues for authors, reviewers, and academic administrators alike. Efficient management of this process is crucial. Hence, the development of JoMSys also referred to as the "Journal Manuscript Management System," aims to address these challenges comprehensively. JoMSys serves as a robust toolkit for managing the journal paper review process. Its key objectives encompass building a user-friendly web-based platform for managing journal manuscript reviews, enhancing the manuscript submission process, and optimizing the reviewer's paper review process. Through the integration of cutting-edge technology and innovative concepts, JoMSys not only resolves existing issues but also enriches research and learning endeavors. The overarching goal is to facilitate the seamless flow of knowledge, elevate research standards, and enhance the global academic experience.